miRBase entry: ola-mir-184-1

Stem-loop ola-mir-184-1


Accession
MI0019420
Description
Oryzias latipes ola-mir-184-1 precursor miRNA
Gene family
MIPF0000059; mir-184

Literature search
1 open access papers mention ola-mir-184-1
(1 sentences)

Sequence

uuauagucacucacaucUCCUUAUCACUUUUCCAGCCCAgcuauguggucuguauucguUGGACGGAGAACUGAUAAGGGcaugugcaugacauua
.....((((..(((((.(((((((((.((((((.(.(((((...(((.....)))..))))).))))))).))))))))).)))))..))))....

Structure
uuaua    cu     c         C      A C     uau   g 
     guca  cacau UCCUUAUCA UUUUCC G CCAgc   gug u
     ||||  ||||| ||||||||| |||||| | |||||   ||| c
     cagu  gugua GGGAAUAGU AAGAGG C GGUug   uau u
-auua    ac     c         C      - A     -cu   g 


Annotation confidence Not enough data
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Genome context
3: 25857484-25857579 [+]

Database links

Mature ola-miR-184-5p

Accession MIMAT0022535
Description Oryzias latipes ola-miR-184-5p mature miRNA
Sequence 18 - UCCUUAUCACUUUUCCAGCCCA - 39
Evidence experimental
SOLiD [1]

Mature ola-miR-184-3p

Accession MIMAT0022536
Description Oryzias latipes ola-miR-184-3p mature miRNA
Sequence 60 - UGGACGGAGAACUGAUAAGGG - 80
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8