Stem-loop ola-mir-181b-1

Accession

MI0019423

Description

Oryzias latipes ola-mir-181b-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

2 open access papers mention ola-mir-181b-1
(19 sentences)

Sequence

agcaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUuaacuauguggaagagCUCACUGAACGAUGAAUGCAacugugucccagauuucuu
......((.((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))).))..........

Structure

----agcaaa  u    aucAA         CUG           aa  a 
          gg caca     CAUUCAUUG   UCGGUGGGUUu  cu u
          || ||||     |||||||||   |||||||||||  ||  
          cc gugu     GUAAGUAGC   AGUCACUCgag  gg g
uucuuuagac  u    -caAC         --A           aa  u 

Annotation confidence Not enough data

Genome context

4: 12358479-12358573 [+]

Mature ola-miR-181b-5p

• Accession: MIMAT0022540
• Description: Oryzias latipes ola-miR-181b-5p mature miRNA
• Sequence: 17 - AACAUUCAUUGCUGUCGGUGGGUU - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-181b-3p

• Accession: MIMAT0022541
• Description: Oryzias latipes ola-miR-181b-3p mature miRNA
• Sequence: 57 - CUCACUGAACGAUGAAUGCA - 76
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8