miRBase entry: ola-let-7a-1

Stem-loop ola-let-7a-1


Accession
MI0019430
Description
Oryzias latipes ola-let-7a-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ola-let-7a-1
(28 sentences)

Sequence

agacuguccuuuggggUGAGGUAGUAGGUUGUAUAGUuuuaggggucaugcccuuccugucagauaaCUAUACAACUUACUGUCUUUCcuaaaguggcu
.....(((((((((((.(((((((((((((((((((((..((((......))))...........))))))))))))))))))))))))))))).))).

Structure
agacu   -        U                     ---------uu    gu 
     guc cuuugggg GAGGUAGUAGGUUGUAUAGUu           aggg  c
     ||| |||||||| |||||||||||||||||||||           ||||   
     cgg gaaaucCU UUCUGUCAUUCAACAUAUCaa           uccc  a
----u   u        -                     uagacuguccu    gu 


Annotation confidence Not enough data
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Genome context
6: 6146863-6146961 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-let-7a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-let-7a-5p

Accession MIMAT0022549
Description Oryzias latipes ola-let-7a-5p mature miRNA
Sequence 17 - UGAGGUAGUAGGUUGUAUAGU - 37
Evidence experimental
SOLiD [1]

Mature ola-let-7a-3p

Accession MIMAT0022550
Description Oryzias latipes ola-let-7a-3p mature miRNA
Sequence 68 - CUAUACAACUUACUGUCUUUC - 88
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8