Stem-loop ola-mir-138

Accession

MI0019435

Description

Oryzias latipes ola-mir-138 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

gguguguguguugcAGCUGGUGUUGUGAAUCAGGCCgaugacacacaccuccuaaaagccggcuauuucacaacaccaggguggcaccgcaucacu
((((((.(((((((..(((((((((((((...(((((......................)))))..))))))))))))).)))))))))))))...

Structure

---      u       AG             UCA     augacacaca 
   ggugug guguugc  CUGGUGUUGUGAA   GGCCg          c
   |||||| |||||||  |||||||||||||   |||||           
   cuacgc cacggug  gaccacaacacuu   ucggc          c
uca      -       -g             -ua     cgaaaauccu 

Annotation confidence Not enough data

Genome context

6: 23333297-23333392 [+]

Mature ola-miR-138

• Accession: MIMAT0022554
• Description: Oryzias latipes ola-miR-138 mature miRNA
• Sequence: 15 - AGCUGGUGUUGUGAAUCAGGCC - 36
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8