miRBase entry: ola-mir-1-1

Stem-loop ola-mir-1-1


Accession
MI0019437
Description
Oryzias latipes ola-mir-1-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
3 open access papers mention ola-mir-1-1
(17 sentences)

Sequence

gacagcggccugcuugggggACAUACUUCUUUAUAUGCCCAUaugaacacgagcaacuaUGGAAUGUAAAGAAGUAUGUAucccagguugggagaaaugac
.....(..((.((((((((.((((((((((((((((..(((((((........))..))))).)))))))))))))))).)))))))).))..).......

Structure
--gacag gg  u        g                GC     --  aac 
       c  cc gcuugggg ACAUACUUCUUUAUAU  CCAUa  ug   a
       |  || |||||||| ||||||||||||||||  |||||  ||    
       g  gg uggacccu UGUAUGAAGAAAUGUA  GGUau  ac   c
caguaaa ag  u        A                -A     ca  gag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
7: 5261661-5261761 [+]

Database links

Mature ola-miR-1-5p

Accession MIMAT0022557
Description Oryzias latipes ola-miR-1-5p mature miRNA
Sequence 21 - ACAUACUUCUUUAUAUGCCCAU - 42
Evidence experimental
SOLiD [1]

Mature ola-miR-1-3p

Accession MIMAT0022558
Description Oryzias latipes ola-miR-1-3p mature miRNA
Sequence 60 - UGGAAUGUAAAGAAGUAUGUA - 80
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8