miRBase entry: ola-mir-462

Stem-loop ola-mir-462


Accession
MI0019439
Description
Oryzias latipes ola-mir-462 precursor miRNA


Sequence

gauuGUAACGGAACCCAUAAUGCagcuguaauaauaugucccagcugguuaugggguccguuuccauc
(((.(.((((((.((((((((.((((((..(((...)))..)))))))))))))).)))))).).)))

Structure
   u U      A        G      ua   a 
gau G AACGGA CCCAUAAU Cagcug  aua  
||| | |||||| |||||||| ||||||  ||| u
cua c uugccu ggguauug gucgac  ugu  
   c u      g        -      cc   a 


Annotation confidence Not enough data
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Genome context
7: 6519353-6519420 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-462
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-462

Accession MIMAT0022561
Description Oryzias latipes ola-miR-462 mature miRNA
Sequence 5 - GUAACGGAACCCAUAAUGC - 23
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8