Stem-loop sequence ola-let-7a-2

AccessionMI0019444 (change log)
DescriptionOryzias latipes let-7a-2 stem-loop
Gene family MIPF0000002; let-7
Literature search

2 open access papers mention ola-let-7a-2
(28 sentences)

Stem-loop
        u          gu         --------   u      g 
5' caggg gagguaguag  uguauaguu        ugg gggugg a
   ||||| ||||||||||  |||||||||        ||| ||||||  
3' guccc uuccguuauc  acauaucaa        acu cccacc c
        -          ug         uaguggau   u      u 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MEDAKA1) Overlapping transcripts
7: 13614181-13614265 [+]
sense
ENSORLT00000026169 ; ola-let-7a-2-201; exon 1
Clustered miRNAs
< 10kb from ola-let-7a-2
ola-let-7e7: 13613915-13613999 [+]
ola-let-7a-27: 13614181-13614265 [+]
Database links

Mature sequence ola-let-7a

Accession MIMAT0022566
Sequence

6 - 

ugagguaguagguuguauaguu

 - 27

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).