miRBase entry: ola-mir-200a

Stem-loop ola-mir-200a

Accession

MI0019448

Description

Oryzias latipes ola-mir-200a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

uagaaaugucuucuaggauccaucuuaccugacagugauggacuguacagcuguugcucuAACACUGUCUGGUAACGAuguuuccuggggggcucug
((((...(((((((((((..(((((((((.(((((((.((((.......((....)))))).))))))).))))).))))..)))))))))))))))

Structure

    aau           uc    -     u       a    cuguaca  u 
uaga   gucuucuagga  cauc uuacc gacagug ugga       gc g
||||   |||||||||||  |||| ||||| ||||||| ||||       ||  
gucu   cgggggguccu  guAG AAUGG CUGUCAC Aucu       cg u
    ---           uu    C     U       A    -------  u

Annotation confidence Not enough data

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Genome context

7: 217696-217792 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-200a

Accession	MIMAT0022571
Description	Oryzias latipes ola-miR-200a mature miRNA
Sequence	61 - AACACUGUCUGGUAACGA - 78
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8