miRBase entry: ola-mir-200b

Stem-loop ola-mir-200b

Accession

MI0019449

Description

Oryzias latipes ola-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

gagcagcuuuaggcgacuaccuccaucuuacgaggcagcauuggauaucaucccuuucucUAAUACUGCCUGGUAAUGAUGauggucgucaccugccc
.........((((.(((.(((..((((((((.((((((.((((((.............)))))).)))))).)))).))))..))).))).))))...

Structure

gagcagcuu    c   u   uc    -    g      c      uauca 
         uagg gac acc  cauc uuac aggcag auugga     u
         |||| ||| |||  |||| |||| |||||| ||||||     c
         gucc cug ugg  GUAG AAUG UCCGUC UAAUcu     c
------ccc    a   c   ua    U    G      A      cuuuc

Annotation confidence Not enough data

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Genome context

7: 217985-218082 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-200b

Accession	MIMAT0022572
Description	Oryzias latipes ola-miR-200b mature miRNA
Sequence	61 - UAAUACUGCCUGGUAAUGAUG - 81
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8