Stem-loop ola-mir-338-1

Accession

MI0019459

Description

Oryzias latipes ola-mir-338-1 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

acuggcuggucccagaAACAACAUCCUGGUGCUGCCUGAGUguguaaugcaaacUCCAGCAUCAGUGAUUUUGUUgcugggggcgugccccu
...(((((.((((((.(((((.((((((((((((...((((.(((...))).))))))))))))).))).))))).)))))).)).)))...

Structure

acu   -  g      a     C   -         CCU    g   a 
   ggc ug ucccag AACAA AUC CUGGUGCUG   GAGU ugu  
   ||| || |||||| ||||| ||| |||||||||   |||| ||| a
   ccg gc gggguc UUGUU UAG GACUACGAC   CUca acg  
ucc   u  g      g     U   U         ---    a   u 

Annotation confidence Not enough data

Genome context

8: 10136028-10136119 [-]

Mature ola-miR-338-5p

• Accession: MIMAT0022579
• Description: Oryzias latipes ola-miR-338-5p mature miRNA
• Sequence: 17 - AACAACAUCCUGGUGCUGCCUGAGU - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-338-3p

• Accession: MIMAT0022580
• Description: Oryzias latipes ola-miR-338-3p mature miRNA
• Sequence: 55 - UCCAGCAUCAGUGAUUUUGUU - 75
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8