miRBase entry: ola-mir-27c

Stem-loop ola-mir-27c

Accession

MI0019461

Description

Oryzias latipes ola-mir-27c precursor miRNA

Gene family

MIPF0000036; mir-27

Literature search

1 open access papers mention ola-mir-27c
(1 sentences)

Sequence

auucuagccuggcugugcggcagcAGGACUUAGCCCACAUGUGAACagugaguguaugccaugUUCACAGUGGUUAAGUUCUGccgccacagggcugcagccagcau
......((.((((((((((((.(((((((((((((.((.((((((((.((.((....))))))))))))))))))))))))))).))).....)).)))))))))..

Structure

auucua  c       -  -----   a             C  A        g  a  g 
      gc uggcugu gc     ggc gcAGGACUUAGCC AC UGUGAACa ug gu u
      || ||||||| ||     ||| ||||||||||||| || |||||||| || ||  
      cg accgacg cg     ccg cGUCUUGAAUUGG UG ACACUUgu ac cg a
----ua  -       u  ggaca   c             -  -        -  -  u

Annotation confidence Not enough data

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Genome context

8: 13688175-13688281 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-27c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-27c-5p

Accession	MIMAT0022581
Description	Oryzias latipes ola-miR-27c-5p mature miRNA
Sequence	25 - AGGACUUAGCCCACAUGUGAAC - 46
Evidence	experimental SOLiD [1]

Mature ola-miR-27c-3p

Accession	MIMAT0022582
Description	Oryzias latipes ola-miR-27c-3p mature miRNA
Sequence	64 - UUCACAGUGGUUAAGUUCUG - 83
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8