miRBase entry: ola-mir-23a-1

Stem-loop ola-mir-23a-1

Accession

MI0019462

Description

Oryzias latipes ola-mir-23a-1 precursor miRNA

Gene family

MIPF0000027; mir-23

Sequence

auuugagucugucggccaggggaauuccuggcagagugauuuuugagacuacaggacugaAUCACAUUGCCAGGGAUUUCCAauggcugccaugaau
.......((((.((((((.(((((((((((((((.(((((((................))))))).)))))))))))))))..)))))).)).))..

Structure

auuugag  -  u      -g               a       uugagac 
       uc ug cggcca  gggaauuccuggcag gugauuu       u
       || || ||||||  ||||||||||||||| |||||||        
       ag ac gucggu  CCUUUAGGGACCGUU CACUAag       a
-----ua  u  c      aA               A       ucaggac

Annotation confidence Not enough data

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Genome context

8: 13688406-13688502 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-23a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-23a

Accession	MIMAT0022583
Description	Oryzias latipes ola-miR-23a mature miRNA
Sequence	61 - AUCACAUUGCCAGGGAUUUCCA - 82
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8