Stem-loop ola-mir-181a-1

Accession

MI0019465

Description

Oryzias latipes ola-mir-181a-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

2 open access papers mention ola-mir-181a-1
(108 sentences)

Sequence

gacuacuccaugugcucacggggAACAUUCAACGCUGUCGGUgaguuugugcuacgaucaaaACCAUCGACCGUUGACUGUACccugagaggucgcgugcggaccc
.....((.(((((((((.(((((.(((.((((((..(((((((.((((............))))))))))))))))).))).))))).)))..)))))).))....

Structure

gacua  c      --   a     A   U      CU       a    gugcu 
     cu caugug  cuc cgggg ACA UCAACG  GUCGGUg guuu     a
     || ||||||  ||| ||||| ||| ||||||  ||||||| ||||      
     gg gugcgc  gag guccC UGU AGUUGC  CAGCUAC CAaa     c
-ccca  c      ug   a     A   C      --       -    acuag 

Annotation confidence Not enough data

Genome context

9: 27956541-27956646 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-181a-1

Mature ola-miR-181a-5p

• Accession: MIMAT0022586
• Description: Oryzias latipes ola-miR-181a-5p mature miRNA
• Sequence: 24 - AACAUUCAACGCUGUCGGU - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-181a-3p

• Accession: MIMAT0022587
• Description: Oryzias latipes ola-miR-181a-3p mature miRNA
• Sequence: 63 - ACCAUCGACCGUUGACUGUAC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8