miRBase entry: ola-mir-181b-2

Stem-loop ola-mir-181b-2


Accession
MI0019466
Description
Oryzias latipes ola-mir-181b-2 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
1 open access papers mention ola-mir-181b-2
(18 sentences)

Sequence

uccaggagucaaccuuaaggcugcaauaAACAUUCAUUGCUGUCGGUGGGUUuaugcaggaacaacucacugaucaaugaaugcaaacugcgguucgcacauccugcuga
..((((((((((((...((..((((.......(((((((..(((((((((((...........))))))))))))))))))))))..))..)))).).)).)))))....

Structure
--uc     -  - -    uua  gc    auaAACA       CU           uaug 
    cagga gu c aacc   ag  ugca       UUCAUUG  GUCGGUGGGUU    c
    ||||| || | ||||   ||  ||||       |||||||  |||||||||||    a
    guccu ca g uugg   uc  acgu       aaguaac  uagucacucaa    g
aguc     a  c c    -cg  aa    -------       --           caag 


Annotation confidence Not enough data
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Genome context
9: 27956674-27956783 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-181b-5p

Accession MIMAT0022540
Description Oryzias latipes ola-miR-181b-5p mature miRNA
Sequence 29 - AACAUUCAUUGCUGUCGGUGGGUU - 52
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8