miRBase entry: ola-mir-24a-3

Stem-loop ola-mir-24a-3


Accession
MI0019467
Description
Oryzias latipes ola-mir-24a-3 precursor miRNA
Gene family
MIPF0000041; mir-24


Sequence

ggacauuugggcugggauuccugugccuacugagcugauuaucaguccuauagaaccacUGGCUCAGUUCAGCAGGAACAGgaguccaguccgcucacgacu
.......((((((((.((((((((.(((.(((((((((...(((((...........))))).))))))))).))).)))))))))))))))).........

Structure
--ggacauu        g        g   a         uua     ccua 
         ugggcugg auuccugu ccu cugagcuga   ucagu    u
         |||||||| |||||||| ||| |||||||||   |||||    a
         gccugacc ugagGACA GGA GACUUGACU   GGUca    g
ucagcacuc        -        A   C         --C     ccaa 


Annotation confidence Not enough data
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Genome context
9: 8309654-8309755 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-24a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-24a

Accession MIMAT0022545
Description Oryzias latipes ola-miR-24a mature miRNA
Sequence 60 - UGGCUCAGUUCAGCAGGAACAG - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8