miRBase entry: ola-mir-23b

Stem-loop ola-mir-23b

Accession

MI0019468

Description

Oryzias latipes ola-mir-23b precursor miRNA

Gene family

MIPF0000027; mir-23

Sequence

uuucaugucugggcugugaggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACCACacagccuugacccggacggcugcuauggcaa
.(((..(((.((((((((.((((((((((((((.((((((.............)))))))).))))))))))..)).)))))))).)))..)))..(((.....)))..

Structure

--------------u   au   u        a  --          -  c      gugac 
               uuc  guc gggcugug gg  guuccuggcg ug ugauuu     u
               |||  ||| |||||||| ||  |||||||||| || ||||||     u
               agg  cag uccgacaC CC  UAGGGACCGU AC ACUAaa     a
aacgguaucgucggc   cc   u        A  AU          U  -      auagu

Annotation confidence Not enough data

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Genome context

9: 8313668-8313776 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-23b

Accession	MIMAT0022588
Description	Oryzias latipes ola-miR-23b mature miRNA
Sequence	56 - AUCACAUUGCCAGGGAUUACCAC - 78
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8