miRBase entry: ola-mir-9a-4

Stem-loop ola-mir-9a-4


Accession
MI0019469
Description
Oryzias latipes ola-mir-9a-4 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
4 open access papers mention ola-mir-9a-4
(15 sentences)

Sequence

gaaauuugggaaguggguuguuaucuuugguuaucuagcuguaugaguguucugcucgucAUAAAGCUAGAUAACCGAAAGuaaaaacuacuuccagacucuuc
........((((((((....((((.(((((((((((((((..((((((.....)))))).....))))))))))))))).))))...)))))))).........

Structure
-gaaauuug        guug    c               ---gu      g 
         ggaagugg    uuau uuugguuaucuagcu     augagu u
         ||||||||    |||| |||||||||||||||     |||||| u
         ccuucauc    aauG AAGCCAAUAGAUCGA     ugcucg c
cuucucaga        -aaa    A               AAUAc      u 


Annotation confidence Not enough data
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Genome context
9: 14619699-14619802 [-]

Database links

Mature ola-miR-9a-3p

Accession MIMAT0022537
Description Oryzias latipes ola-miR-9a-3p mature miRNA
Sequence 61 - AUAAAGCUAGAUAACCGAAAG - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8