miRBase entry: ola-mir-1306

Stem-loop ola-mir-1306


Accession
MI0019471
Description
Oryzias latipes ola-mir-1306 precursor miRNA
Gene family
MIPF0000531; mir-1306


Sequence

cucccauuggagccuccugaugauuucggccuggaacagggcagggcaccuccaCCACCUCCCCUGCAAACGUCCagugacgcagagguaauggacguuagcucuggugg
.......(((((..(((((.....(((......))).....)))))...)))))(((((......((.((((((((...((......))..)))))))).))...)))))

Structure
cucccauuggagccuccugaugauuucggccuggaacagggcagggcaccucca     UCCCCU  A        gug  gc 
                                                      CCACC      GC AACGUCCa   ac  a
                                                      |||||      || ||||||||   ||   
                                                      ggugg      cg uugcaggu   ug  g
------------------------------------------------------     ---ucu  a        -aa  ga 


Annotation confidence Not enough data
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Genome context
9: 23130448-23130557 [-]

Database links

Mature ola-miR-1306

Accession MIMAT0022590
Description Oryzias latipes ola-miR-1306 mature miRNA
Sequence 55 - CCACCUCCCCUGCAAACGUCC - 75
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8