miRBase entry: ola-mir-106a

Stem-loop ola-mir-106a


Accession
MI0019473
Description
Oryzias latipes ola-mir-106a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

gcuuucauuagcugcccagcaugagaUAAAGUGCUUACAGUGCAGGUagugaucagaacagucuacugcagugugagcacuucucucccacgcugguccaaagcgcc
..........(((..(((((..((((..(((((((((((.(((((.(((.............)))))))).))))))))))).))))....))))).....)))...

Structure
gcuuucauua   ---gc     --au    UA           G     G   ugauc 
          gcu     ccagc    gaga  AAGUGCUUACA UGCAG Uag     a
          |||     |||||    ||||  ||||||||||| ||||| |||     g
          cga     ggucg    cucu  uucacgagugu acguc auc     a
-------ccg   aaccu     cacc    -c           g     -   ugaca 


Annotation confidence Not enough data
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Genome context
10: 2001187-2001293 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-106a

Accession MIMAT0022591
Description Oryzias latipes ola-miR-106a mature miRNA
Sequence 27 - UAAAGUGCUUACAGUGCAGGU - 47
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8