miRBase entry: ola-mir-19d

Stem-loop ola-mir-19d

Accession

MI0019474

Description

Oryzias latipes ola-mir-19d precursor miRNA

Gene family

MIPF0000011; mir-19

Sequence

uucugguccuggccagcuuugcagggugggcagucagccugugcaugccuggagcagcUGUGCAAACCCAUGCAAAACUGacuauggccagca
..((((((.(((.(((.((((((((((..(((..((((.(((.((....))..))))))))))..)))).)))))).))).))).))))))..

Structure

uu      c   c   c      -    gg   gu    c   -g  u 
  cugguc ugg cag uuugca gggu  gca  cagc ugu  ca g
  |||||| ||| ||| |||||| ||||  |||  |||| |||  ||  
  gaccgg auc GUC AAACGU CCCA  CGU  GUcg acg  gu c
ac      u   a   A      A    AA   --    -   ag  c

Annotation confidence Not enough data

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Genome context

10: 2001485-2001577 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-19d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-19d

Accession	MIMAT0022592
Description	Oryzias latipes ola-miR-19d mature miRNA
Sequence	59 - UGUGCAAACCCAUGCAAAACUG - 80
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8