miRBase entry: ola-mir-19b-2

Stem-loop ola-mir-19b-2


Accession
MI0019476
Description
Oryzias latipes ola-mir-19b-2 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
1 open access papers mention ola-mir-19b-2
(1 sentences)

Sequence

cccugagccggguuuauggugaguuuuguugguuugccuucagcugcguucgguguuugcUGUGCAAAUCCAUGCAAAgcccgcuguacccgaggcucaccgg
.((((((((((((..((((((.(((((((((((((((...((((.(((.....)))..)))).))))).))).))))))).))))))))))..))))))..))

Structure
c  --      --    uu      a       -   -     cuu    -u   u 
 cc  ugagcc  gggu  auggug guuuugu ugg uuugc   cagc  gcg u
 ||  ||||||  ||||  |||||| ||||||| ||| |||||   ||||  ||| c
 gg  acucgg  ccca  ugucgc cgAAACG ACC AAACG   GUcg  ugu g
-  cc      ag    --      c       U   U     --U    uu   g 


Annotation confidence Not enough data
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Genome context
10: 23325051-23325153 [-]

Database links

Mature ola-miR-19b

Accession MIMAT0022594
Description Oryzias latipes ola-miR-19b mature miRNA
Sequence 61 - UGUGCAAAUCCAUGCAAA - 78
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8