miRBase entry: ola-mir-30e

Stem-loop ola-mir-30e

Accession

MI0019479

Description

Oryzias latipes ola-mir-30e precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

uggaagcugggauuuugucagugugggCUUUCAGUCGGAUGUUUGCaucaucuuauugccacaaaccaccaacagaaacccuauugccaacaugcauugauauuug
(((.....(((.((((((..(.((((.....((((.(((((.......))))).)))).......))))).)))))).))).....))).................

Structure

-----------------   aagcu   a      ca u    --gCUUU    C     UU 
                 ugg     ggg uuuugu  g gugg       CAGU GGAUG  U
                 |||     ||| ||||||  | ||||       |||| |||||  G
                 acc     ccc aagaca  c cacc       guua ucuac  C
guuuauaguuacguaca   guuau   a      -a -    aaacacc    u     ua

Annotation confidence Not enough data

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Genome context

11: 21880298-21880403 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-30e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-30e

Accession	MIMAT0022597
Description	Oryzias latipes ola-miR-30e mature miRNA
Sequence	28 - CUUUCAGUCGGAUGUUUGC - 46
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8