Stem-loop ola-mir-30c

Accession

MI0019480

Description

Oryzias latipes ola-mir-30c precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

accacucucugaaucuaauggaaauguaaauuuguugucuuguagacugucuccaggcaUGUAAACAUCCUACACUCUCAGCuguguugucauggagcugggagaggggu
(((.((((((.(.((((.(((.((((((.....((((...(((((..(((...((....))...)))..)))))....)))))))))).)))))))..).)))))).)))

Structure

   a      g -a    a   a      aauuu    -ucu     ac   cuc  g 
acc cucucu a  ucua ugg aaugua     guug    uguag  ugu   ca g
||| |||||| |  |||| ||| ||||||     ||||    |||||  |||   ||  
ugg gagagg u  aggu acu uugugu     CGAC    ACAUC  ACA   GU c
   g      g cg    -   g      -----    UCUC     CU   AAU  a 

Annotation confidence Not enough data

Genome context

11: 21880471-21880580 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-30c

Mature ola-miR-30c

• Accession: MIMAT0022598
• Description: Oryzias latipes ola-miR-30c mature miRNA
• Sequence: 60 - UGUAAACAUCCUACACUCUCAGC - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8