Stem-loop ola-mir-126

Accession

MI0019483

Description

Oryzias latipes ola-mir-126 precursor miRNA

Gene family

MIPF0000115; mir-126

Sequence

cgcaacauggccagcuuugcggucCAUUAUUACUUUUGGUACGCGcuaugccacucucaacUCGUACCGUGAGUAAUAAUGcacugcgacuggugccgacuccg
.........(((((..(((((((.(((((((((((.(((((((.(...............).))))))).))))))))))).))))))))))))..........

Structure

-cgcaacaug     cu       c           U       C cuaugc 
          gccag  uugcggu CAUUAUUACUU UGGUACG G      c
          |||||  ||||||| ||||||||||| ||||||| |      a
          ugguc  agcguca GUAAUAAUGAG GCCAUGC c      c
gccucagccg     --       c           U       U aacucu 

Annotation confidence Not enough data

Genome context

12: 5052105-5052208 [+]

Mature ola-miR-126-5p

• Accession: MIMAT0022602
• Description: Oryzias latipes ola-miR-126-5p mature miRNA
• Sequence: 25 - CAUUAUUACUUUUGGUACGCG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-126-3p

• Accession: MIMAT0022603
• Description: Oryzias latipes ola-miR-126-3p mature miRNA
• Sequence: 62 - UCGUACCGUGAGUAAUAAUG - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8