Stem-loop ola-mir-139

Accession

MI0019494

Description

Oryzias latipes ola-mir-139 precursor miRNA

Gene family

MIPF0000117; mir-139

Sequence

uauuauggccuggcuguauUCUACAGUGCAUGUGUCUCCAguauguuagugaugcuacuggagacucggcucuguuggaauaacaaccaggacccaacg
......(((((((.((((((((((((.((.((.((((((((((.((.......)))))))))))).)))).))).)))))).))).))))).)).....

Structure

uauuau  -     c   -      -   U  A  U          u  ua 
      gg ccugg ugu auUCUA CAG GC UG GUCUCCAgua gu  g
      || ||||| ||| |||||| ||| || || |||||||||| ||  u
      cc ggacc aca uaaggu guc cg gc cagaggucau cg  g
-gcaac  a     a   a      u   u  -  u          -  ua 

Annotation confidence Not enough data

Genome context

13: 21690229-21690327 [+]

Mature ola-miR-139

• Accession: MIMAT0022616
• Description: Oryzias latipes ola-miR-139 mature miRNA
• Sequence: 20 - UCUACAGUGCAUGUGUCUCCA - 40
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8