Stem-loop ola-mir-194

Accession

MI0019499

Description

Oryzias latipes ola-mir-194 precursor miRNA

Gene family

MIPF0000055; mir-194

Literature search

1 open access papers mention ola-mir-194
(1 sentences)

Sequence

ucggccauggccuugcugguguuugcuggaUGUAACAGCAACUCCAUGUggaagcugugucuguuCCAGUGGAGGUGCUGUUACCUGcagagaccaccgaaccccgcugg
.((((...((..(((.((((.(((((.((...((((((((.((((((.(((((..........))))))))))).)))))))))).))))).)))).)))..)).)))).

Structure

u    cau  cc   c    g     u  aUG        A      G     gcug 
 cggc   gg  uug uggu uuugc gg   UAACAGCA CUCCAU Uggaa    u
 ||||   ||  ||| |||| ||||| ||   |||||||| |||||| |||||     
 gucg   cc  agc acca agacG CC   AUUGUCGU GAGGUG ACCuu    g
g    --c  ca   c    g     U  ---        G      -     gucu 

Annotation confidence Not enough data

Genome context

14: 20215672-20215781 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-194

Mature ola-miR-194-5p

• Accession: MIMAT0022622
• Description: Oryzias latipes ola-miR-194-5p mature miRNA
• Sequence: 31 - UGUAACAGCAACUCCAUGU - 49
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-194-3p

• Accession: MIMAT0022623
• Description: Oryzias latipes ola-miR-194-3p mature miRNA
• Sequence: 66 - CCAGUGGAGGUGCUGUUACCUG - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8