Stem-loop ola-mir-125b-1

Accession

MI0019507

Description

Oryzias latipes ola-mir-125b-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention ola-mir-125b-1
(2 sentences)

Sequence

aaccuguaccucucucauUCCCUGAGACCCUAACUUGUGAcguuuugcucugaugugcacggguugggcucuugggagcugcgaggggcacucacacaucu
.....((.((((((.(((((((.((((.((((((((((((((((.......))))).))))))))))).))))))))).)).)))))).))..........

Structure

-----aaccu  a      u  -     U    C           -     uu 
          gu ccucuc ca uUCCC GAGA CCUAACUUGUG Acguu  g
          || |||||| || ||||| |||| ||||||||||| |||||  c
          ca ggggag gu gaggg uucu ggguugggcac uguag  u
ucuacacacu  c      c  c     -    c           g     uc 

Annotation confidence Not enough data

Genome context

14: 15646480-15646580 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-125b-1

Mature ola-miR-125b

• Accession: MIMAT0022627
• Description: Oryzias latipes ola-miR-125b mature miRNA
• Sequence: 19 - UCCCUGAGACCCUAACUUGUGA - 40
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8