Stem-loop sequence ola-let-7a-4

AccessionMI0019508 (change log)
DescriptionOryzias latipes let-7a-4 stem-loop
Gene family MIPF0000002; let-7
Literature search

2 open access papers mention ola-let-7a-4
(27 sentences)

Stem-loop
   uucca     -  g    uu   g   u            ----  aga   a 
5'      guguu cc cagg  gag uag agguuguauagu    uc   gug c
        ||||| || ||||  ||| ||| ||||||||||||    ||   |||  
3'      cacaa gg gucc  uuc auc uccgacauguca    ag   cac a
   ---aa     a  a    cu   g   c            auag  -ga   c 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MEDAKA1) Overlapping transcripts
14: 15650352-15650450 [-]
intergenic
Clustered miRNAs
< 10kb from ola-let-7a-4
ola-mir-100-214: 15650826-15650927 [-]
ola-let-7a-414: 15650352-15650450 [-]
ola-mir-125b-114: 15646480-15646580 [-]
Database links

Mature sequence ola-let-7a

Accession MIMAT0022566
Sequence

19 - 

ugagguaguagguuguauaguu

 - 40

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).