miRBase entry: ola-mir-100-2

Stem-loop ola-mir-100-2

Accession

MI0019509

Description

Oryzias latipes ola-mir-100-2 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

aacggguaacgccagcugccacaAACCCGUAGAUCCGAACUUguggugacuggcugcgcaagcucguaucuauagguaugugucuuccuggcaaauacagcu
.....(((..(((((..(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).)...)))))...)))....

Structure

aacgg   -ac     -cu c    A   C      C   A      guga 
     gua   gccag   g caca ACC GUAGAU CGA CUUgug    c
     |||   |||||   | |||| ||| |||||| ||| ||||||    u
     cau   cgguc   c gugu ugg uaucua gcu gaacgc    g
-ucga   aaa     cuu u    a   a      u   c      gucg

Annotation confidence Not enough data

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Genome context

14: 15650826-15650927 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-100-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-100

Accession	MIMAT0022614
Description	Oryzias latipes ola-miR-100 mature miRNA
Sequence	24 - AACCCGUAGAUCCGAACUU - 42
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8