miRBase entry: ola-mir-125a

Stem-loop ola-mir-125a


Accession
MI0019517
Description
Oryzias latipes ola-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention ola-mir-125a
(2 sentences)

Sequence

ccguaugccccucugUCCCUGAGACCCUUAACCUGUGaagucaaagcaggucACAGGUGAGGUCCUCGGGAACAgggcugcauucag
..(.((((..((((((.((((((..(((((.(((((((.((....))...))))))))))))..)))))).))))))..)))).)..

Structure
cc u    cc      C      AC     A       --a  c 
  g augc  cucugU CCUGAG  CCUUA CCUGUGa   gu a
  | ||||  |||||| ||||||  ||||| |||||||   ||  
  c uacg  gggACA GGGCUC  GGAGU GGACAcu   cg a
ga u    uc      A      CU     -       gga  a 


Annotation confidence Not enough data
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Genome context
16: 11685123-11685209 [-]

Database links

Mature ola-miR-125a-5p

Accession MIMAT0022638
Description Oryzias latipes ola-miR-125a-5p mature miRNA
Sequence 16 - UCCCUGAGACCCUUAACCUGUG - 37
Evidence experimental
SOLiD [1]

Mature ola-miR-125a-3p

Accession MIMAT0022639
Description Oryzias latipes ola-miR-125a-3p mature miRNA
Sequence 53 - ACAGGUGAGGUCCUCGGGAACA - 74
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8