miRBase entry: ola-mir-199a-4

Stem-loop ola-mir-199a-4


Accession
MI0019518
Description
Oryzias latipes ola-mir-199a-4 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
2 open access papers mention ola-mir-199a-4
(2 sentences)

Sequence

auuccggcuccguccaCCCAGUGUUCAGACUACCUGUUcauugucauacugguguACAGUAGUCUGCACAUUGGUUAgacugggccgggcu
..((((((((.(((...(((((((.((((((((.(((.((((........)))).))))))))))).)))))))...))).))))))))..

Structure
au        c   caC       U        C   U    guc 
  uccggcuc guc   CCAGUGU CAGACUAC UGU cauu   a
  |||||||| |||   ||||||| |||||||| ||| ||||    
  gggccggg cag   GGUUACA GUCUGAUG ACA gugg   u
uc        u   AUU       C        -   u    uca 


Annotation confidence Not enough data
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Genome context
17: 16117948-16118038 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-199a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-199a-5p

Accession MIMAT0022538
Description Oryzias latipes ola-miR-199a-5p mature miRNA
Sequence 17 - CCCAGUGUUCAGACUACCUGUU - 38
Evidence experimental
SOLiD [1]

Mature ola-miR-199a-3p

Accession MIMAT0022539
Description Oryzias latipes ola-miR-199a-3p mature miRNA
Sequence 56 - ACAGUAGUCUGCACAUUGGUUA - 77
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8