miRBase entry: ola-mir-9b-2

Stem-loop ola-mir-9b-2


Accession
MI0019522
Description
Oryzias latipes ola-mir-9b-2 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
4 open access papers mention ola-mir-9b-2
(14 sentences)

Sequence

aagggaccgcggguuaguuugugUCUUUGGUUAUCUAGCUGUAUGAguuuuaauuucauaaagcuagagaaccgaaaguacgaacugacgccgagcacuu
.(((..(((.(.(((((((((((.((((((((.(((((((.((((((.......)))))).))))))).)))).))))))))))))))).))).)..)))

Structure
a   ga -  c g           U    -    A       G      uu 
 agg  c cg g guuaguuugug CUUU GGUU UCUAGCU UAUGAg  u
 |||  | || | ||||||||||| |||| |||| ||||||| ||||||  u
 uuc  g gc c cagucaagcau gaaa ccaa agaucga auacuu  a
-   ac a  - g           -    g    g       a      ua 


Annotation confidence Not enough data
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Genome context
17: 23411155-23411254 [-]

Database links

Mature ola-miR-9b-5p

Accession MIMAT0022546
Description Oryzias latipes ola-miR-9b-5p mature miRNA
Sequence 24 - UCUUUGGUUAUCUAGCUGUAUGA - 46
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8