miRBase entry: ola-mir-15a

Stem-loop ola-mir-15a


Accession
MI0019534
Description
Oryzias latipes ola-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention ola-mir-15a
(4 sentences)

Sequence

gcugaccggagcucuggugaugcugUAGCAGCACGGAAUGGUUUGuggguuauugugagaugcaggccaugccgugcugccgcaguaaugcccgauuacacaac
(((......)))((.((((.((((((.(((((((((.((((((((((..(((...)))..)))))))))).))))))))).)))))).)))).)).........

Structure
gcugaccggagc  u    a      A         A          gg   u 
            uc ggug ugcugU GCAGCACGG AUGGUUUGug  uua  
            || |||| |||||| ||||||||| ||||||||||  ||| u
            ag ccgu augacg cgucgugcc uaccggacgu  agu  
---caacacauu  c    a      c         g          ag   g 


Annotation confidence Not enough data
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Genome context
21: 11191711-11191814 [+]

Database links

Mature ola-miR-15a

Accession MIMAT0022650
Description Oryzias latipes ola-miR-15a mature miRNA
Sequence 26 - UAGCAGCACGGAAUGGUUUG - 45
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8