miRBase entry: ola-mir-19a

Stem-loop ola-mir-19a


Accession
MI0019540
Description
Oryzias latipes ola-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
1 open access papers mention ola-mir-19a
(1 sentences)

Sequence

augcacagacugucaguucucuguuaguuuugcauaguugcacugcaagaagagaugcguUGUGCAAAUCUAUGCAAAgcugauaguggccuguguuuucaucugaau
..((((((...((((.....(((((((((((((((((((((((((((........))))..))))))..)))))))))))))))))))))))))))............

Structure
----------au      acu    guucu                 --      --    aga 
            gcacag   guca     cuguuaguuuugcauag  uugcac  ugca   a
            ||||||   ||||     |||||||||||||||||  ||||||  ||||    
            uguguc   cggu     gauagucgAAACGUAUC  AACGUG  gcgu   g
uaagucuacuuu      ---    -----                 UA      Uu    aga 


Annotation confidence Not enough data
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Genome context
21: 25693520-25693627 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ola-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-19a

Accession MIMAT0022653
Description Oryzias latipes ola-miR-19a mature miRNA
Sequence 61 - UGUGCAAAUCUAUGCAAA - 78
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8