miRBase entry: ola-mir-18-2

Stem-loop ola-mir-18-2


Accession
MI0019541
Description
Oryzias latipes ola-mir-18-2 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ucuagugcuuaugcUAAGGUGCAUCUAGUGCAGAUAGugaaauagacuagcaccuacugcccuaagugcuccuucuggcauaaggagcuggg
.(((((.((((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))))..))))).

Structure
u     -g         --   U    C   U    A   -  aaau 
 cuagu  cuuaugcUA  AGG GCAU UAG GCAG UAG ug    a
 |||||  |||||||||  ||| |||| ||| |||| ||| ||    g
 ggucg  gaauacggu  ucc cgug auc cguc auc ac    a
g     ag         cu   u    a   c    -   c  gauc 


Annotation confidence Not enough data
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Genome context
21: 25693655-25693746 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ola-mir-18-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-18

Accession MIMAT0022532
Description Oryzias latipes ola-miR-18 mature miRNA
Sequence 15 - UAAGGUGCAUCUAGUGCAGAUAG - 37
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8