miRBase entry: ola-mir-29c

Stem-loop ola-mir-29c


Accession
MI0019546
Description
Oryzias latipes ola-mir-29c precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
2 open access papers mention ola-mir-29c
(14 sentences)

Sequence

uacauaugccacucaaagauaacugauuuccucugguguuuagagccuucugcagccuucUAGCACCAUUUGAAAUCGguuaugacacuguggaacacugca
........((((......((((((((((((...(((((((.(((((........))..))))))))))...))))))))))))......)))).........

Structure
-uacauaug    ucaaag            cuc       u   --  cuu 
         ccac      auaacugauuuc   ugguguu aga  gc   c
         ||||      ||||||||||||   ||||||| |||  ||    
         ggug      uauugGCUAAAG   ACCACGA Ucu  cg   u
acgucacaa    ucacag            UUU       -   uc  acg 


Annotation confidence Not enough data
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Genome context
23: 8740492-8740593 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-29c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-29c

Accession MIMAT0022656
Description Oryzias latipes ola-miR-29c mature miRNA
Sequence 61 - UAGCACCAUUUGAAAUCG - 78
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8