miRBase entry: ola-mir-135b

Stem-loop ola-mir-135b


Accession
MI0019547
Description
Oryzias latipes ola-mir-135b precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

auugcuguugugucuUAUGGCUUUUUAUUCCUACgugaugguagauggguucauguaggaguagaagccacuaaacacgcggugagugcu
.(((((((.((((.(((((((((((.((((((((((((............)))))))))))))))))))).)))))))))))))).....

Structure
----a       u    c   -        U            uggua 
     uugcugu gugu uUA UGGCUUUU AUUCCUACguga     g
     ||||||| |||| ||| |||||||| ||||||||||||      
     aguggcg caca aau accgaaga ugaggauguacu     a
ucgug       -    -   c        -            ugggu 


Annotation confidence Not enough data
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Genome context
23: 13494412-13494501 [+]

Database links

Mature ola-miR-135b

Accession MIMAT0022657
Description Oryzias latipes ola-miR-135b mature miRNA
Sequence 16 - UAUGGCUUUUUAUUCCUAC - 34
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8