miRBase entry: ola-mir-183-2

Stem-loop ola-mir-183-2


Accession
MI0019548
Description
Oryzias latipes ola-mir-183-2 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
1 open access papers mention ola-mir-183-2
(2 sentences)

Sequence

ugacuccuguucuguguAUGGCACUGGUAGAAUUCAcugugagagcucacuaucaGUGAAUUACCAUAGGGCCAUAaacagagcagagaaa
....(((((((((((.((((((..(((((..((((((((..((......))..)))))))))))))....)))))).))))))))).))..

Structure
ugac  -         g      --AC     GA        ug  ag 
    uc cuguucugu uAUGGC    UGGUA  AUUCAcug  ag  c
    || ||||||||| ||||||    |||||  ||||||||  ||   
    ag gacgagaca AUACCG    ACCAU  UAAGUGac  uc  u
--aa  a         a      GGAU     --        ua  ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
23: 14604483-14604573 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-183-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-183-5p

Accession MIMAT0022555
Description Oryzias latipes ola-miR-183-5p mature miRNA
Sequence 18 - AUGGCACUGGUAGAAUUCA - 36
Evidence experimental
SOLiD [1]

Mature ola-miR-183-3p

Accession MIMAT0022556
Description Oryzias latipes ola-miR-183-3p mature miRNA
Sequence 56 - GUGAAUUACCAUAGGGCCAUA - 76
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8