miRBase entry: ola-mir-182

Stem-loop ola-mir-182

Accession

MI0019549

Description

Oryzias latipes ola-mir-182 precursor miRNA

Gene family

MIPF0000116; mir-182

Sequence

uuugguucucuaguggugUUUGGCAAUGGUAGAACUCACACuggugagguagauggauccggugguucuagacuugccaacuacugcuugagaguguccaa
.(((((((((.(((((((.(((((((...((((((...((((((..............))))))))))))...))))))).))))))).)))))...))))

Structure

u    ---     u       U       UGG      UCA      ugaggu 
 uugg   uucuc aguggug UUGGCAA   UAGAAC   CACugg      a
 ||||   ||||| ||||||| |||||||   ||||||   ||||||       
 aacc   gagag ucgucau aaccguu   aucuug   guggcc      g
-    ugu     u       c       cag      ---      uaggua

Annotation confidence Not enough data

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Genome context

23: 14604891-14604991 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-182

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-182

Accession	MIMAT0022658
Description	Oryzias latipes ola-miR-182 mature miRNA
Sequence	19 - UUUGGCAAUGGUAGAACUCACAC - 41
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8