miRBase entry: ola-let-7b-2

Stem-loop ola-let-7b-2


Accession
MI0019550
Description
Oryzias latipes ola-let-7b-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ola-let-7b-2
(14 sentences)

Sequence

uacagggUGAGGUAGUAGGUUGUGUGGUuucaggguugugauuuuaccccauaaggagcuaacuauacaaccuacugccuucccugga
..(((((.(((((((((((((((((((((......(((((.........)))))......))))))))))))))))))))))))))..

Structure
ua     U                     ucaggg     auu 
  caggg GAGGUAGUAGGUUGUGUGGUu      uugug   u
  ||||| |||||||||||||||||||||      |||||   u
  guccc uuccgucauccaacauaucaa      aauac   a
ag     -                     ucgagg     ccc 


Annotation confidence Not enough data
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Genome context
23: 6185677-6185764 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-let-7b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-let-7b

Accession MIMAT0022551
Description Oryzias latipes ola-let-7b mature miRNA
Sequence 8 - UGAGGUAGUAGGUUGUGUGGU - 28
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8