Stem-loop ola-mir-729

Accession

MI0019555

Description

Oryzias latipes ola-mir-729 precursor miRNA

Gene family

MIPF0001307; mir-729

Literature search

1 open access papers mention ola-mir-729
(7 sentences)

Sequence

gaggauccguacccuccagagcaggggcuguaucauaaccaggcugugagcugaacgagCAUGGGUAUGAUACGACCUCaguuuggaggagcuccuccuc
(((((...((..((((((((.(.((((.(((((((((.(((.(((((.......)).))).))).))))))))).)))).))))))))).))...)))))

Structure

     ucc  ac        g a    c         a   g   -  ga 
gagga   gu  ccuccaga c gggg uguaucaua cca gcu gu  g
|||||   ||  |||||||| | |||| ||||||||| ||| ||| ||  c
cuccu   cg  ggagguuu g CUCC GCAUAGUAU GGU Cga ca  u
     ccu  -a        - a    A         G   A   g  ag 

Annotation confidence Not enough data

Genome context

scaffold1021: 47304-47403 [+]

Mature ola-miR-729

• Accession: MIMAT0022662
• Description: Oryzias latipes ola-miR-729 mature miRNA
• Sequence: 60 - CAUGGGUAUGAUACGACCUC - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8