miRBase entry: ola-mir-190b

Stem-loop ola-mir-190b


Accession
MI0019556
Description
Oryzias latipes ola-mir-190b precursor miRNA
Gene family
MIPF0000076; mir-190


Sequence

ugaccugcuagaggcugugUGAUAUGUUUGAUAUUCGGUUGuucuugugcuucaucaugucaacuaaauaucagacauauuccaacagacucuggcccuca
......(((((((.(((((.(((((((((((((((.(((((....((........))...))))).))))))))))))))).).)))).))))))).....

Structure
ugaccu       g    - U               C     uucu  ugc 
      gcuagag cugu g GAUAUGUUUGAUAUU GGUUG    ug   u
      ||||||| |||| | ||||||||||||||| |||||    ||    
      cggucuc gaca c uuauacagacuauaa ucaac    ac   u
-acucc       a    a c               a     -ugu  uac 


Annotation confidence Not enough data
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Genome context
scaffold3772: 6997-7097 [+]

Database links

Mature ola-miR-190b

Accession MIMAT0022663
Description Oryzias latipes ola-miR-190b mature miRNA
Sequence 20 - UGAUAUGUUUGAUAUUCGGUUG - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8