miRBase entry: ola-mir-459

Stem-loop ola-mir-459


Accession
MI0019558
Description
Oryzias latipes ola-mir-459 precursor miRNA
Gene family
MIPF0001322; mir-459


Sequence

caccugcccguggcgugcugcugUCAGUAACAAGGAUUCAUCCUGuugugacgcugcagacggaCAGGAAGUCAUUGUUACUgggagugucugucacaugaugug
.........((((((.((.(((.((((((((((.((((..(((((((((..........)).))))))))))).)))))))))).))))).))))))........

Structure
caccugccc      u  u   g          G    CA       -  gacg 
         guggcg gc gcu UCAGUAACAA GAUU  UCCUGuu gu    c
         |||||| || ||| |||||||||| ||||  ||||||| ||     
         cacugu ug uga ggUCAUUGUU CUGA  AGGACag ca    u
-guguagua      c  -   g          A    --       g  gacg 


Annotation confidence Not enough data
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Genome context
ultracontig26: 364478-364582 [+]

Database links

Mature ola-miR-459-5p

Accession MIMAT0022664
Description Oryzias latipes ola-miR-459-5p mature miRNA
Sequence 24 - UCAGUAACAAGGAUUCAUCCUG - 45
Evidence experimental
SOLiD [1]

Mature ola-miR-459-3p

Accession MIMAT0022665
Description Oryzias latipes ola-miR-459-3p mature miRNA
Sequence 65 - CAGGAAGUCAUUGUUACU - 82
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8