miRBase entry: ola-mir-143

Stem-loop ola-mir-143


Accession
MI0019561
Description
Oryzias latipes ola-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143

Literature search
1 open access papers mention ola-mir-143
(3 sentences)

Sequence

ugguucugguccaucucugcugcccauggugcagugcugcaucucuggucaguugauagucUGAGAUGAAGCACUGUAGCUcgggacggagggcaggagucucagucug
.((..(((((((..((((.((((((..(.(((((((((.((((((..(((....))).....)))))).))))))))).)..))).)))))))..)))...)))).)).

Structure
u  uu    ---   au    g   -   au g         g      ---ug   a 
 gg  cugg   ucc  cucu cug ccc  g ugcagugcu caucuc     guc g
 ||  ||||   |||  |||| ||| |||  | ||||||||| ||||||     |||  
 uc  gacu   agg  ggga ggc ggg  C AUGUCACGA GUAGAG     uag u
g  -u    cug   ac    -   a   cU G         A      Ucuga   u 


Annotation confidence Not enough data
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Genome context
ultracontig115: 5319909-5320017 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-143

Accession MIMAT0022668
Description Oryzias latipes ola-miR-143 mature miRNA
Sequence 62 - UGAGAUGAAGCACUGUAGCU - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8