miRBase entry: vun-MIR162

Stem-loop vun-MIR162


Accession
MI0019569
Description
Vigna unguiculata vun-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
1 open access papers mention vun-MIR162
(1 sentences)

Sequence

agaugaggugaagucacuggaggcagcgguucaucgaucucuuccugaauuuggcuguggaagaacacaaagcaagaaucggUCGAUAAACCUCUGCAUCCAGcgcucacuuugccucucu
(((.(((((((((((.(((((.((((.((((.(((((((..(((.((..((((..(((......))))))).)).)))..))))))).)))).)))).))))).)...)))))))))))))

Structure
   u          --- a     g    c    c       uc   c  aa    gc   gg 
aga gaggugaagu   c cugga gcag gguu aucgauc  uuc ug  uuug  ugu  a
||| ||||||||||   | ||||| |||| |||| |||||||  ||| ||  ||||  |||   
ucu cuccguuuca   g GACCU CGUC CCAA UAGCUgg  aag ac  aaac  aca  a
   -          cuc c     A    U    A       cu   a  -g    --   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature vun-miR162

Accession MIMAT0022756
Description Vigna unguiculata vun-miR162 mature miRNA
Sequence 83 - UCGAUAAACCUCUGCAUCCAG - 103
Evidence experimental
cloned [1]

References

  1. Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress
    "Paul S, Kundu A, Pal A"
    "Plant Cell Tissue Organ Culture. (2011) 105:233-242