Stem-loop vun-MIR408

Accession

MI0019578

Description

Vigna unguiculata vun-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Sequence

uguuaaggauguccacaacaaggucgagguaacagucagaaacaggacagagcaggggaacaggcagagcauggauggagucaucaacacaauagagccaagaaaaugagagugacagaacaaauuaucuguugugauucugcucAUGCACUGCCUCUUCCCUGGCucuaucaguauuucuccuuucuuucauauugaauccaaaacuuuuuuucucuuaaguuuuagcacaaauucacaacc
......((((.((......((((..((((........(((((...((.(((((.((((((.((((((.((((((.(((((((......((((((((..........((.......))..........))))))))))))))).)))))).)))))).)))))).))))).))....))))))))).))))......))))))(((((((..........))))))).................

Structure

-----------------------------------uguuaa    g  cacaac    uc    uaacaguc     -cag  c     a      c      a      a       aucaac        gccaagaaaa  ag 
                                         ggau uc      aagg  gagg        agaaa    ga agagc ggggaa aggcag gcaugg uggaguc      acaauaga          ug  a
                                         |||| ||      ||||  ||||        |||||    || ||||| |||||| |||||| |||||| |||||||      ||||||||          ||  g
                                         ccua ag      uuuc  uucc        ucuuu    cu ucuCG UCCCUU UCCGUC CGUAcu gucuuag      uguugucu          ac  u
ccaacacuuaaacacgauuuugaauucucuuuuuuucaaaa    -  uuauac    -u    --------     auga  a     G      C      A      c       ------        auuaaacaag  ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature vun-miR408

• Accession: MIMAT0022765
• Description: Vigna unguiculata vun-miR408 mature miRNA
• Sequence: 146 - AUGCACUGCCUCUUCCCUGGC - 166
• Evidence: experimental ; cloned [1]

References

1. Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress
   "Paul S, Kundu A, Pal A"
   "Plant Cell Tissue Organ Culture. (2011) 105:233-242