Dead miRNA entry

miRNA accession:
MI0019589
miRNA ID:
dre-mir-27c-2
Forward to:
MI0001930
Comment:
The sequences previously named mir-27c-1 and mir-27c-2 map to the same locus in the GRCz10 genome assembly. The entries are therefore merged.

Previous miRNA entry

Stem-loop sequence dre-mir-27c-2

AccessionMI0019589 (change log)
DescriptionDanio rerio miR-27c-2 stem-loop
Gene family MIPF0000036; mir-27
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled miR-27. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

miR-27 is a family of microRNA precursors found in animals, including humans. MicroRNAs are typically transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. The excised region or, mature product, of the miR-27 precursor is the microRNA mir-27. Herpesvirus saimiri expresses several non-coding RNAs (HSURs) which have been found to significantly reduce the level of mir-27 in a host cell. It has been proposed that miR-27 operates together with miR-23 and mir-24 in a co-operative cluster.

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Stem-loop
       gugu    u            c   u       a  cauc 
5' gguu    ggug caggacuuaacc acu gugaaca ug    g
   ||||    |||| |||||||||||| ||| ||||||| ||     
3' ccag    ccgc gucuugaauugg uga cacuugu ac    a
       aucc    c            -   -       a  uuca 
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Confidence
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Database links

Mature sequence dre-miR-27c-5p

Accession MIMAT0003401
Previous IDsdre-miR-27c*
Sequence

19 - 

cuuaacccacuugugaacaaug

 - 40

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Evidence experimental; cloned [1]
Database links

Mature sequence dre-miR-27c-3p

Accession MIMAT0001798
Previous IDsdre-miR-27c
Sequence

56 - 

uucacagugguuaaguucugc

 - 76

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Evidence experimental; cloned [1]
Database links
Predicted targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).