miRBase entry: sha-mir-138-1

Stem-loop sha-mir-138-1


Accession
MI0019597
Description
Sarcophilus harrisii sha-mir-138-1 precursor miRNA
Gene family
MIPF0000075; mir-138


Sequence

cagcccccacagauucugguacguugcugcAGCUGGUGUUGUGAAUCAGGCCGacaagcagcucauccuauuacccggcuauuucaccacaccaggguugcaucauaccgcucuccuucagaaggcugagaagacgcauggaauccagcc
...........((((((((((.(.(((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))).).))))(((((.((.(((....))))).))).))..)))))).....

Structure
cagcccccaca      ------------------------------    c u   u  AG       U     UCA     acaagcagcu 
           gauucu                              ggua g ugc gc  CUGGUGU GUGAA   GGCCG          c
           ||||||                              |||| | ||| ||  ||||||| |||||   |||||           
           cuaagg                              ccau c acg ug  gaccaca cacuu   ucggc          a
------ccgac      uacgcagaagagucggaagacuuccucucg    a u   u  -g       c     -ua     ccauuauccu 


Annotation confidence Not enough data
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Genome context
GL834650.1: 1024447-1024596 [+]

Database links

Mature sha-miR-138

Accession MIMAT0022771
Description Sarcophilus harrisii sha-miR-138 mature miRNA
Sequence 31 - AGCUGGUGUUGUGAAUCAGGCCG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87