miRBase entry: sha-mir-352

Stem-loop sha-mir-352


Accession
MI0019598
Description
Sarcophilus harrisii sha-mir-352 precursor miRNA


Sequence

gucuauucagugguccgucucucuuaccagagagcaguuuggaagcaauggaaggugcaucuaggacugucuaaccugagaauggugaaucucagggucaAUCUCAGGUUUGUCAGCCCAUgaggugccuucucuagaccucgaaucccg
....((((.(.((((.(.((((((....)))))))...(((....))).(((((((((.((..((.(((.(.(((((((((.((((((...)))...))).))))))))).).))).))..)).)))))))))...)))).)))))....

Structure
gucu    a u    cgucucucuuaccagagagcaguuuggaagcaau         a  ua  a   u u         a   ---   a 
    auuc g gguc                                  ggaaggugc uc  gg cug c aaccugaga ugg   uga  
    |||| | ||||                                  ||||||||| ||  || ||| | ||||||||| |||   ||| u
    uaag c ccag                                  ucuuccgug ag  CC GAC G UUGGACUCU acu   acu  
gccc    - u    -------------------------------auc         g  UA  C   U U         A   ggg   c 


Annotation confidence Not enough data
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Genome context
GL834659.1: 2574240-2574389 [+]

Database links

Mature sha-miR-352

Accession MIMAT0022772
Description Sarcophilus harrisii sha-miR-352 mature miRNA
Sequence 101 - AUCUCAGGUUUGUCAGCCCAU - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87