miRBase entry: sha-mir-1329

Stem-loop sha-mir-1329


Accession
MI0019599
Description
Sarcophilus harrisii sha-mir-1329 precursor miRNA
Gene family
MIPF0000635; mir-1329


Sequence

gaaauaccucaaaaguagguugagcaugauuugcuguucucaugguccgugugaugugugcaugcuacccagagggaggaaucuuggucugguuguaggggUACAGUGAUCGGGUUAUGAuggauuuucucaaguaaucaccucauaacu
.....(((((....).))))((((..(((((.(((((((((((((((((.((.((.(((((.(.(((((((((..(((....)))..)))))..)))).)))))))).)))))))))))).)))).......)))))))).)))).....

Structure
gaaauaccucaaaaguaggu    ca     u   -------    -          u  g  g     a g    --     gg   g 
                    ugag  ugauu gcu       guuc ucaugguccg gu au ugugc u cuac  ccaga  gag a
                    ||||  ||||| |||       |||| |||||||||| || || ||||| | ||||  |||||  |||  
                    acuc  acuaa uga       uagg AGUAUUGGGC UA UG ACAUg g gaug  ggucu  uuc a
---------------ucaau    -c     -   acucuuu    u          -  G  -     - g    uu     gg   u 


Annotation confidence Not enough data
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Genome context
GL834685.1: 638211-638360 [-]

Database links

Mature sha-miR-1329

Accession MIMAT0022773
Description Sarcophilus harrisii sha-miR-1329 mature miRNA
Sequence 102 - UACAGUGAUCGGGUUAUGA - 120
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20044575
    The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
    "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
    "Science (2010) 327:84-87